I don't think any application can detect ripping errors that are included in the ripped source wave signal. Technically the encoded files are correct.
As far as I know, the only way to find such errors with software is to compare the files with other, correctly ripped files.
Perhaps you should just re-rip the "unsecurely" ripped CDs using MC's secure mode. Can you differentiate them (for example, maybe you saved MC's secure rip logs) and are you speaking about tens, hundreds or thousands of CDs?