MC27 /SSL [path]PublicCert.pem [path]PrivateCert.pem
I should note: It might also make sense to build the certbot functionality into MC entirely.
Alternatively, MC could store the Certificate filepath instead of importing the files (or copy the certificates to %appdata%).
Just updating the files and restarting MC would then work for renewal.
Just reading the file from a set path on disk is what most of the other software I use that relies on certs does.