@Yaobing: yes, TS format. Playing the recording back, stream selection shows only one video stream (the incorrect one).
@NickF, you are correct there is only one RF channel, however the RF channel contains a transport stream which contains multiple broadcast stations/channels, known as program ID's (PID's), so in my case the one tuner is receiving one RF channel containing multiple PID's. When I initially scanned the channels on the tuner, it automatically matched the PID's to the channel names via the inband EPG data. This particular station is called "PRIME" and has a specific PID for video and PID for audio, which is predefined. Unfortunately the inband EPG is non-conventional format, so I am using an external EPG source and within MC match the EPG channels to the scanned channels, which is then presented in the MC Guide. Now if I go into the Guide and schedule a program to record on "PRIME", and while recording also watch the program live, then both should be using the same PID's, but what is actually happening is LiveTV is using the correct PID's, but the recording is using the wrong PID's off the same transport stream (RF channel).
Note this issue is only happening on one specific broadcast station. All other DVB-T broadcast stations work fine. So I'm wondering if MC has some corrupt PID numbers that need to be flushed-out and reconfigured. I did try completely delete the MC EPG and remove all channels, then start again with fresh scan on all tuners, and reconfigure EPG and freshly update all EPG data, but that didn't fix the issue.