The dropped frames are happening because you are playing something madvr thinks is 29.97fps with your display set to 24fps.
Actually, a lot of TV shows are shot on film, and are put on DVD at their original framerate, but with duplicated frames to pad the framerate to 29.97fps. The X-Files and Magnum PI are this way: they are natively 23.976. Not sure about NYPD Blue.
There are two ways to fix this, the easy way and the good way.
Easy way: Set the display rate to 29.97. The dropped frames will stop. (You may see the occasional stutter because of repeated frames). If you then see "Repeated Frames" constantly increasing in your MadVR display, switch to the good way:
Good way: If you check the video with MediaInfo, it may report the frame rate as 23.976 or 24fps, or it may explicitly say the video is progressive. Another way to tell is if the video shows constantly increasing "repeated frames" when played at 29.97. To fix this, set the "FPS" tag in MC to be the same as the frame rate indicated in media info, either 23.976 or 24. If your display rate is set to the same rate, you will get perfect playback with no dropped frames. You will see the content as originally shot with no stuttering.
Occasionally you may need to force FILM mode if you see any artifacts in the picture. Google madvr film mode. You can do this by adding DEINT=FILM to the filename of the video, or by using MadVR profile rules.
Almost all MOVIES on DVD require 23.976/24 fps playback to display perfectly. I have only a handful that are hard-interlaced and require 29.97. For TV shows on DVD, it's more of a mixed bag. A lot use 23.976/24, but a significant number are hard interlaced and require 29.97 since they were shot on video. You have to test to be sure.
I've dealt with this issue a lot, but this is a more complete answer to your issue, if you're willing to but a bit of extra effort in to get perfect playback.