First, if the OS reports a file has been copied but does not in fact copy, there is something really wrong with the driver or hardware. It isn't up to MC to waste time confirming what the OS has already told it. If it were to do this "double-check" for every operation it would be much slower than it is. Furthermore, even if it did do the check a 2nd time, it certainly won't help your situation when there are actually deeper issues than MC.
Using 14 does not take the network out of the equation, but it does confirm the fact that it is not the files themselves that are the issue.
I don't believe MC has done much with the Analyze code at least from what I remember reading from the change logs. However this does not mean that other code on which Analyze uses has not change. The fact is some timing has changed, however that is not the issue and does not indicate something wrong it.
Lets look at this in another way. If thousands of MC users have it working without issue, but only one user who has sustained lightning damage reports the issue, where do you think the problem is? Also consider the fact it looks like the OS isn't even copying files correctly.
With that said here is what I would suggest:
1. Make sure you are running a computer that is not infected by a virus. I've seen all kinds of weird issues when newer viruses do Kernel patching etc to hide from virus scanners. If you don't have a scanner on that computer, there is a good chance you could have become infected. There is a tool called HijackThis you can get on the internet. If you run it and PM me a log I can take a look at it.
2. If you do have a scanner, try disabling it temporarily and do a analysis. It may contributing to timing issues with some driver or other.
3. Make sure no other software is running besides MC. Close all other applications and everything in the taskbar.
4. Make sure you have the latest drivers for your computer. That includes chipset, drive controller, video card, audio, network, etc.
Thanks about all I can think of for now. Let me know how it goes.